What is the Hybrid Rat Diversity Panel (HRDP)?
- Panel of 96 inbred rat strains with genetic and phenotypic diversity
- 33 genetically diverse “classic” inbred strains
- Two recombinant inbred (RI) panels: FXLE/LEXF (33 strains, Japan) and HXB/BXH (30 strains, Czech Republic)
- To learn more about recombinant inbred strains, click here
What resources are available for the HRDP?
- Many of the HRDP strains are currently available for experiments. Contact HRDP for details.
- Whole genome sequence data (VCF files for download, variants integrated into Variant Visualizer)
- Quantitative phenotype measurements can be explored through PhenoMiner
How do the HRDP strains relate to the Heterogenous Stock (HS) founder strains?
- Based on sequence similarity, the best match from the HRDP inbred strains has been identified for each of the HS founder strains.
- For more information about the HRDP strains matched to the HS founders, click here
| Classic Inbred Strains | ||||
|---|---|---|---|---|
| Strain | Strain Available | Phenominer Data | Variant Visualizer Data | |
| ACI | ACI/EurMcwi |  |
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| BDIX | BDIX/NemOdaMcwi | |
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| BN | BN/NHsdMcwi | |
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| BN-Lx | BN-Lx/CubMcwi | |
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| BUF | BUF/MnaMcwi | |
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| COP | COP/HsdUwmRrrc | |
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| DA | DA/OlaHsd | |
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| F344 | F344/DuCrl, F344/NCrl, F344/StmMcwi | |
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| FHH | FHH/EurMcwi | |
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| GK | GK/FarMcwi | |
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| HTX | HTX/KyoMcwi | |
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| LE | LE/StmMcwi | |
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| LEW | LEW/Crl | |
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| LH | LH/MavRrrcAek | |
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| LL | LL/MavRrrcAek | |
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| LN | LN/MavRrrcAek | |
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| M520 | M520/NRrrcMcwi | |
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| MNS | MNS/NMcwi | |
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| MR | MR/NRrrc | |
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| MWF | MWF/SimwMcwi | |
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| PD | PD/Cub | |
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| PVG | PVG/SeacMcwi | |
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| RCS | RCS/LavRrrcMcwi | |
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| SBH | SBH/Ygl | |
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| SBN | SBN/Ygl | |
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| SHR | SHR/OlaIpcvMcwi | |
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| SHRSP | SHRSP/A3NCrl | |
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| SR | SR/JrHsd | |
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| SS | SS/HsdMcwiCrl, SS/JrHsdMcwi | |
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| WAG | WAG/RijCrl | |
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| WKY | WKY/NCrl | |
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| HXB/BXH Recombinant Inbred Panel Strains | ||||
|---|---|---|---|---|
| Strain | Strain Available | Phenominer Data | Variant Visualizer Data | |
| BN-Lx | BN-Lx/CubMcwi | |
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| BXH10/Cub | |
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| BXH11/Cub | |
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| BXH12/Cub | BXH12/CubMcwi | |
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| BXH13/Cub | BXH13/CubMcwi | |
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| BXH2/Cub | BXH2/CubMcwi | |
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| BXH3/Cub | |
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| BXH5/Cub | |
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| BXH6/Cub | BXH6/CubMcwi | |
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| BXH8/Cub | |
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| BXH9/Cub | |
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| HXB1/Ipcv | HXB1/IpcvMcwi | |
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| HXB10/Ipcv | HXB10/IpcvMcwi | |
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| HXB13/Ipcv | HXB13/IpcvMcwi | |
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| HXB15/Ipcv | |
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| HXB17/Ipcv | HXB17/IpcvMcwi | |
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| HXB18/Ipcv | HXB18/IpcvMcwi | |
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| HXB2/Ipcv | HXB2/IpcvMcwi | |
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| HXB20/Ipcv | |
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| HXB21/Ipcv | |
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| HXB22/Ipcv | |
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| HXB23/Ipcv | HXB23/IpcvMcwi | |
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| HXB24/Ipcv | |
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| HXB25/Ipcv | |
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| HXB27/Ipcv | |
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| HXB29/Ipcv | |
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| HXB3/Ipcv | |
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| HXB31/Ipcv | HXB31/IpcvMcwi | |
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| HXB4/Ipcv | HXB4/IpcvMcwi | |
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| HXB5/Ipcv | |
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| HXB7/Ipcv | HXB7/IpcvMcwi | |
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| SHR | SHR/OlaIpcvMcwi | |
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